Soft Computing for Biological Systems by Hemant J. Purohit Vipin Chandra Kalia & Ravi Prabhakar More

Soft Computing for Biological Systems by Hemant J. Purohit Vipin Chandra Kalia & Ravi Prabhakar More

Author:Hemant J. Purohit, Vipin Chandra Kalia & Ravi Prabhakar More
Language: eng
Format: epub
Publisher: Springer Singapore, Singapore


Name

Methodology

Dataset

Performance (%)

Reference

Transporter family prediction

Nearest neighbor

TS-3899

72.3%

2008

TransportTP (http://​bioinfo3.​noble.​org/​transporter)

HMM and SVM

81.8%

2009

Functional residue prediction

Evolutionary features

2009

Transporters, their class, family prediction (http://​rbf.​bioinfo.​tw $ sachen/tcrbf.html)

PSSM and biochemical properties

TS-693

Transporter, 76%

Class, 73%

Family, 69%

2010

Transporter family prediction (http://​rbf.​bioinfo.​tw/​~sachen/​ttrbf.​html)

PSSM and biochemical properties

TS-651

ET, 90.1%

Protein/mRNA, 80.1%

Ion transporters, 70.3%

Others, 82.3%

2011



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